Details

Publication year

2016

Form

電子化映像資料

Alternative title

システムズバイオロジⅠ

Systems Biology I

Series title

授業アーカイブ ; 平成28年度

Contents note

2016年04月12日 [1]Introduction to Graphs/Networks, Different network models, Properties of Protein-Protein Interaction Networks, Different centrality measures of nodes, Protein Function prediction using network concepts, Application of network concepts in DNA sequencing, Line graphs.

2016年04月19日 [2]Complex Network Models, Properties of Protein-Protein Interaction Networks, Handling Multivariate data: Concept and types of metrics, distances etc., Hierarchical clustering, Self organizing Mapping

2016年04月26日 [3]Network Centrality measures, Introduction to PCA and PLS, K-mean clustering, Protein function prediction using network concepts.

2016年05月10日 [4]On finding clusters in undirected simple graphs: application to protein complex detection, DPClus software tool, Introduction to DPClusO, Concept of BiClustering, Concept of DNA sequencing

2016年05月17日 [5]Reaction system as ordinary differential equations, Reaction system as stochastic process, Metabolic network and stoichiometric matrix, Graph spectral analysis/Graph spectral clustering and its application to metabolic networks, DEVELOPMENT AND MINING OF A VOLATILE ORGANIC COMPOUND (VOC) DATABASE.

2016年05月24日 [6]Introduction to transcriptional networks, Microarray experiments, MA plots, Normalization of microarray data, Tests for differential expression of genes, Multiple testing and FDR, The concept of Line Graphs.

2016年05月30日 [7]Introduction to next generation sequencing, Introduction to signaling pathways, Reverse Engineering of biological networks, Metabolomics approach for determining growth-specific metabolites based on FT-ICR-MS, Predict functional relations between genes based on expression data

Note

英語による講義

期間: 2016年4月12日から2016年5月31日

講義場所: 情報科学研究科中講義室(L2)

Country of publication

Japan

Title language

Japanese (jpn)

Language of texts

English (eng)

Author information

金谷, 重彦 (カナヤ, シゲヒコ)

AMIN, MD. ALTAF-UL

Reference

シラバス/Syllabus