• Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7 

  Hanawa-Suetsugu, Kyoko; Itoh, Yuzuru; Fatah, Maisarah Ab; Nishimura, Tamako; Takemura, Kazuhiro; Takeshita, Kohei; Kubota, Satoru; Miyazaki, Naoyuki; Wan Mohamad Noor, Wan Nurul Izzati; Inaba, Takehiko; Nguyen, Nhung Thi Hong; Hamada-Nakahara, Sayaka; Oono-Yakura, Kayoko; Tachikawa, Masashi; Iwasaki, Kenji; Kohda, Daisuke; Yamamoto, Masaki; Kitao, Akio; Shimada, Atsushi; Suetsugu, Shiro (Nature Research, 2020-10-18)

  Phagocytosis is a cellular process for internalization of micron-sized large particles including pathogens. The Bin-Amphiphysin-Rvs167 (BAR) domain proteins, including the FCH-BAR (F-BAR) domain proteins, impose specific ...
• Temporal stability of functional brain modules associated with human intelligence 

  Hilger, Kirsten; Fukushima, Makoto; Sporns, Olaf; Fiebach, Christian J. (Wiley Open Access, 2019-10-06)

  Individual differences in general cognitive ability (i.e., intelligence) have been linked to individual variations in the modular organization of functional brain networks. However, these analyses have been limited to ...
• Long Short-Term Memory Networks for In-Vehicle Networks Intrusion Detection Using Reverse Engineered Automotive Packets 

  Desta, Araya Kibrom; Ohira, Shuji; Arai, Ismail; Fujikawa, Kazutoshi (Information Processing Society of Japan, 2020-09-15)

  Nowadays, vehicles are equipped with multiple Electronic Control Units (ECUs) each of which communicates with one another using a specification called Controller Area Network (CAN). CAN provides its own share of benefits ...
• Structural determinants of dynamic fluctuations between segregation and integration on the human connectome 

  Fukushima, Makoto; Sporns, Olaf (Cold Spring Harbor Laboratory Press, 2020-01-20)

  While segregation and integration of neural information in the neocortex are thought to be important for human behavior and cognition, the neural substrates enabling their dynamic fluctuations remain elusive. To tackle ...
• Nutritional conditions and oxygen concentration affect spontaneous occurrence of homologous recombination events but not spontaneous mutagenesis in Escherichia coli 

  Le, Lan Anh Thi; Chang, Phooi Yee; Ando, Sayaka; Conrad, Thomas M.; Nunose, Shohei; Sakai, Akiko; Uefune, Haruka; Akiyama, Masahiro Tatsumi; Maki, Hisaji (The Genetics Society of Japan, 2020-05-11)

  Effects of environmental factors for growth of Escherichia coli on spontaneous mutagenesis and homologous recombination events are described. By analyzing rifampicin-resistant (Rifr) mutation frequencies in an E. coli ...
• COMET Functions as a PCH2 Cofactor in Regulating the HORMA Domain Protein ASY1 

  Balboni, Martina; Yang, Chao; Komaki, Shinichiro; Brun, Jordan; Schnittger, Arp (Elsevier, 2020-08-27)

  The formation of the chromosome axis is key to meiotic recombination and hence the correct distribution of chromosomes to meiotic products. A key component of the axis in Arabidopsis is the HORMA domain protein (HORMAD) ...
• Prediction of daily happiness using supervised learning of multimodal lifelog data 

  YamamotoI, Tetsuya; Yoshimoto, Junichiro; Murillo-Rodriguez, Eric; Machado, Sergio (Periódicos Eletrônicos em Psicologia, 2020-05)

  Developing an approach to predict happiness based on individual conditions and actions could enable us to select daily behaviors for enhancing well-being in life. Therefore, we propose a novel approach of applying machine ...
• Enhancing Multi-Center Generalization of Machine Learning-Based Depression Diagnosis From Resting-State fMRI 

  Nakano, Takashi; Takamura, Masahiro; Ichikawa, Naho; Okada, Go; Okamoto, Yasumasa; Yamada, Makiko; Suhara, Tetsuya; Yamawaki, Shigeto; Yoshimoto, Junichiro (Frontiers Media, 2020-05-28)

  Resting-state fMRI has the potential to help doctors detect abnormal behavior in brain activity and to diagnose patients with depression. However, resting-state fMRI has a bias depending on the scanner site, which makes ...
• Importance of the Habenula for Avoidance Learning Including Contextual Cues in the Human Brain: A Preliminary fMRI Study 

  Yoshino, Atsuo; Okamoto, Yasumasa; Sumiya, Yuki; Okada, Go; Takamura, Masahiro; Ichikawa, Naho; Nakano, Takashi; Shibasaki, Chiyo; Aizawa, Hidenori; Yamawaki, Yosuke; Kawakami, Kyoko; Yokoyama, Satoshi; Yoshimoto, Junichiro; Yamawaki, Shigeto (Frontiers Media, 2020-05-12)

  Human habenula studies are gradually advancing, primarily through the use of functional magnetic resonance imaging (fMRI) analysis of passive (Pavlovian) conditioning tasks as well as probabilistic reinforcement learning ...
• Control of protein function through oxidation and reduction of persulfidated states 

  Dóka; Idai, Tomoak; Dagnell, Markus; Abiko, Yumi; Luong, Nho Cong; Balog, N.; Takata, Tsuyoshi; Espinosa, B; Nishimura, Akira; Cheng, Qing; Funato, Y; Miki, H; Fukuto, J; Prigge, JR; Schmidt, EE; Arnér, Elias; Kumagai, Yoshito; Akaike, Takaaki; Nagy, Péter (American Association for the Advancement of Science, 2020-01-01)

  Irreversible oxidation of Cys residues to sulfinic/sulfonic forms typically impairs protein function. We found that persulfidation (CysSSH) protects Cys from irreversible oxidative loss of function by the formation of ...
• Mitochondrial cysteinyl-tRNA synthetase is expressed via alternative transcriptional initiation regulated by energy metabolism in yeast cells 

  Nishimura, Akira; Nasuno, Ryo; Yoshikawa, Yuki; Jung, Minkyung; Ida, Tomoaki; Matsunaga, Tetsuro; Morita, Masanobu; Takagi, Hiroshi; Motohashi, Hozumi; Akaike, Takaaki (American Society for Biochemistry and Molecular Biology, 2019-09-13)

  Eukaryotes typically utilize two distinct aminoacyl-tRNA synthetase isoforms, one for cytosolic and one for mitochondrialprotein synthesis. However, the genome of budding yeast (Saccharomyces cerevisiae) contains only one ...
• Control of Walking Assist Exoskeleton With Time-delay Based on the Prediction of Plantar Force 

  Ding, Ming; Nagashima, Mikihisa; Cho, Sung-Gwi; Takamatsu, Jun; Ogasawara, Tsukasa (IEEE, 2020-07-20)

  Many kinds of lower-limb exoskeletons were developed for walking assistance. However, when controlling these exoskeletons, time-delay due to the computation time and the communication delays is still a general problem. In ...
• Involvement of I-BAR protein IRSp53 in tumor cell growth via extracellular microvesicle secretion 

  Hu, Hooi Ting; Sasakura, Naoto; Matsubara, Daisuke; Furusawa, Naoko; Mukai, Masahiro; Kitamura, Narufumi; Obayashi, Takeshi; Nishimura, Tamako; Oono-Yakura, Kayoko; Funato, Yosuke; Okamura, Yasunobu; Tarao, Kento; Nakano, Yasushi; Murakami, Yoshinori; Kinoshita, Kengo; Takahashi, Chiaki; Miki, Hiroaki; Gonda, Kohsuke; Scita, Giorgio; Hanawa-Suetsugu, Kyoko; Suetsugu, Shiro (Cold Spring Harbor Laboratory, 2020-04-20)

  Cellular protrusions mediated by the membrane-deforming I-BAR domain protein IRSp53 are involved in cell migration, including metastasis. However, the role of IRSp53 in cell proliferation remains unclear. Here, we examined ...
• Regulation of caveolae through cholesterol-depletion dependent tubulation by PACSIN2/Syndapin II 

  Amir, Aini Gusmira; Takemura, Kazuhiro; Hanawa-Suetsugu, Kyoko; Oono-Yakura, Kayoko; Yasuhara, Kazuma; Kitao, Akio; Suetsugu, Shiro (Cold Spring Harbor Laboratory, 2020-03-25)

  The membrane shaping ability of PACSIN2 via its FCH-BAR (F-BAR) domain has been shown to be essential for caveolar morphogenesis, presumably through the shaping of the caveolar neck. Caveolar membrane contains abundant ...
• Targeting E3 Ubiquitin Ligases and Deubiquitinases in Ciliopathy and Cancer 

  Shiromizu, Takashi; Yuge, Mizuki; Kasahara, Kousuke; Yamakawa, Daishi; Matsui, Takaaki; Bessho, Yasumasa; Inagaki, Masaki; Nishimura, Yuhei (MDPI, 2020-08-19)

  Cilia are antenna-like structures present in many vertebrate cells. These organelles detect extracellular cues, transduce signals into the cell, and play an essential role in ensuring correct cell proliferation, migration, ...
• Forces to Drive Neuronal Migration Steps 

  Minegishi, Takunori; Inagaki, Naoyuki (Frontiers Media, 2020-09-01)

  To establish and maintain proper brain architecture and elaborate neural networks, neurons undergo massive migration. As a unique feature of their migration, neurons move in a saltatory manner by repeating two distinct ...
• How different are different diff algorithms in Git? 

  Nugroho, Yusuf Sulistyo; Hata, Hideaki; Matsumoto, Kenichi (Springer Nature, 2019-09-11)

  Automatic identification of the differences between two versions of a file is a common and basic task in several applications of mining code repositories. Git, a version control system, has a diff utility and users can ...
• 軽量な類似度計算によるプロジェクト間のソースファイル集合の再利 

  伊藤, 薫; 石尾, 隆; 神田, 哲也; 井上, 克郎 (一般社団法人電子情報通信学会, 2020-07-01)

  ソフトウェア開発の現場において，オープンソースソフトウェアのソースコードをコピーして再利用することが一般的に行われている．ソフトウェアの再利用は，独自に開発した場合と比べて品質を向上させるが，プロジェクトの開発期間が長くなるにつれ，どこから，どのバージョンをコピーしたのかという情報が失われてしまうことがある．そこで本研究では，分析対象ソフトウェアのソースファイルと再利用したライブラリの版管理システムのリポジトリの内容を比較し，再利用した ...
• Selfish yet Optimal Routing by Adjusting Perceived Traffic Information of Road Networks 

  Hara, Takanori; Sasabe, Masahiro; Kasahara, Shoji (IEEE, 2020-08-27)

  Traffic congestion in urban areas causes economic and time loss. Such traffic congestion is caused by selfish routing where users aim to minimize their own travel time. Even if a navigation system provides them with ...
• Policy reuse for dialog management using action-relation probability 

  Nguyen, Tung. T.; Yoshino, Koichiro; Sakti, Sakriani; Nakamura, Satoshi (IEEE, 2020-08-19)

  We study the problem of policy adaptation for reinforcement-learning-based dialog management. Policy adaptation is a commonly used technique to alleviate the problem of data sparsity when training a goal-oriented dialog ...

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